Streptococcus thermophilus
Streptococcus penicillium
Penicillium roqueforti
Aspergillus niger
Step 1: Role of microorganisms in yoghurt production.
Yoghurt production relies on the fermentation of milk by specific bacteria, typically starter cultures such as \textit{Streptococcus thermophilus} and \textit{Lactobacillus delbrueckii subsp. bulgaricus}.
Step 2: Explanation of other microorganisms.
Streptococcus penicillium (Option B):} Incorrect. This organism is not utilized in yoghurt production.
Penicillium roqueforti (Option C):} Incorrect. This fungus is integral to blue cheese production, not yoghurt.
Aspergillus niger (Option D):} Incorrect. This fungus is employed in the industrial synthesis of citric acid, not yoghurt. \[ \therefore \text{The correct answer is: Streptococcus thermophilus}