Patent rights are exclusive, but they are not absolute; the Patents Act, 1970 balances the inventor's monopoly against the practical needs of the State to function without being held hostage by individual patent holders on matters of public importance. Chapter XVII of the Act is where this balance is struck for inventions the Government wants to use.
Section 100 permits the Central Government, or anyone it authorises in writing, to use or exercise a patented invention for the purposes of the Government, and it does this without needing the patentee's consent. This is a genuine limitation on the patentee's otherwise exclusive right to decide who may use the invention, since ordinarily the patentee alone controls that decision, but here the Government is carved out as an exception.
Importantly, this does not touch the validity of the patent itself, the patent is not voided by such use, nor does the patentee forfeit rights against everyone else; the patentee can still stop private parties from using the invention without a licence. What changes is narrowly confined to the Government's own use, and even that use typically comes with an obligation to pay compensation to the patentee, which further confirms that the patent survives and the patentee's rights are curtailed only in this specific respect, not eliminated.
So the genuine limitation on a patentee's rights under the Act is that the Government may use the patented invention for its own purposes without needing the patentee's consent.